ECOLOGICAL FUNCTION PRELIMINARY PROTOCOL LIST
^methods from study
*guidelines for developing protocol
4
# PROTOCOL NAME
EXISTING
AVAILABLE
PROTOCOL?
APPLICABLE TO
ALL NNBFS?
STATUS TYPE
EXPERTISE
REQUIRED
COST/
EFFORT
SOURCE
Example Protocol
1 Change in vegetation structure Y Draft Included Field Medium Medium
NYC Parks Salt Marsh Monitoring Guidelines
Additional Protocols to Consider
2 Fauna Presence Y Y Suggested Field Low TBD
NYC Parks Salt Marsh Monitoring Guidelines
3 Horseshoe Crab Spawning Activity Survey Y
N (beach/
sandy shorline)
recommended
existing protocol
Field Medium TBD
Sclafani, M., K. McKown, B. Udelson. 2014. Horseshoe Crab (Limulus polyphemus) Spawning Activity Survey Protocol for the New
York State Marine District. Cornell University Cooperative Extension of Suffolk County. New York State Department of Environ-
mental Conservation. (http://nyhorseshoecrab.org/NY_Horseshoe_Crab/Documents_files/Total%20Count%20Protocol.pdf)
4
Standardized North American Marsh
Bird Monitoring Protocol
Y N (salt marsh) Draft Included Field High TBD
Conway, C.J. 2011. Standardized North American Marsh Bird Monitoring Protocol. Water-
birds 34(3):319-346. http://www.bioone.org/doi/pdf/10.1675/063.034.0307
5 Saltmarsh Habitat & Avian Research Programs (SHARP) Y
N (salt marsh
only)
recommended
existing protocol
Field High TBD
Saltmarsh Habitat & Avian Research Program. 2015. Nest Monitoring Standard Operat-
ing Procedure. (https://www.tidalmarshbirds.net/?page_id=1596)
6
Monitoring Nekton as a Bioindica-
tor in Shallow Estuarine Habitats
N*
N (sea grass
and salt marsh)
Suggested Field High TBD
Raposa, K.B., C.T. Roman, Heltshe, J.F. 2003. Monitoring nekton as a bioindicator in shalLestuarine habitats. Envi-
ronmental Monitoring and Assessment 81: link.springer.com/chapter/10.1007/978-94-017-0299-7_21
7
Quantifying Vegetation and Nekton Response to
Tidal Restoration of a New England Salt Marsh
N^ N (salt marsh) Suggested Field High TBD
Roman, C.T., K.B. Raposa, S.C. Adamowicz, M.J. James-Pirri, J.G. Catena. 2002. Quantifying Vegeta-
tion and Nekton Response to Tidal Restoration of a New England Salt Marsh. Restoration Ecology 10(3):450-
460. https://onlinelibrary.wiley.com/doi/full/10.1046/j.1526-100X.2002.01036.x
8 Plant and animal species ID using iNaturalist Y Y Suggested Field Low TBD
https://www.inaturalist.org/pages/how+can+i+use+it
9 Natural Areas Conservancy Upland Forest Assessment Y N (upland forest) Suggested Field High TBD
Natural Areas Conservancy
10 Benthic epifauna survey Y N (salt marsh) Suggested Field Medium TBD
NYC Parks Salt Marsh Monitoring Guidelines
11 Benthic fauna survey Y N (salt marsh) Suggested Field High TBD
NYC Parks Salt Marsh Monitoring Guidelines
12 Vegetation extent using aerial imagery Y N (salt marsh) Draft Included Desktop Low TBD
NYC Parks Salt Marsh Monitoring Guidelines
13
Vegetation extent in field transects/
plots (area covered by veg)
Y N (salt marsh) Suggested Field Medium TBD
NYC Parks Salt Marsh Monitoring Guidelines
14
Rapid assessment protocol to measure height
of vegetation (to be developed?)
TBD TBD TBD Field Low TBD
TWG?
15
Hudson River Living Shorelines Rapid
Assessment Protocol
Y TBD
recommended
existing protocol
Field Low TBD
Findlay, S. O. Ferguson, E. Hauser, J. Miller and A. Williams. Hudson River Monitoring Protocol: Living Shorelines Rapid Assessment
Protocol. NYSDEC Hudson River National Estuarine Research Reserve, Norrie Point Environmental Center, Staatsburg, NY 12580.
16
Rapid assessment protocol connectiv-
ity across land/water (to be developed?)
TBD TBD TBD Field Low TBD
TWG?
17 Vegetation survival survey Y N (salt marsh) Suggested Field Medium TBD
NYC Parks Salt Marsh Monitoring Guidelines
18 Invasive Plant survery Y N (salt marsh) Suggested Field Medium TBD
NYC Parks Salt Marsh Monitoring Guidelines
19 NOAA Inundation Analysis Tool Y Y Suggested Desktop Low TBD
https://tidesandcurrents.noaa.gov/inundation/usersguide/usersguide.pdf
20 NOAA Tide Level Monitoring Protocol Y Y Suggested Desktop Low TBD
NOAA
22 Marsh surface elevation tables (SET) Y N (salt marsh) Suggested Field High TBD
NYC Parks Salt Marsh Monitoring Guidelines
22 Real time kinematic (RTK) positioning Y N (salt marsh) Suggested Field High TBD
NYC Parks Salt Marsh Monitoring Guidelines
23
Spatially integrative metrics reveal hidden vul-
nerability of microtidal salt marshes
N ^ N (salt marsh) TBD Desktop High TBD
https://www.nature.com/articles/ncomms14156
24
USGS measurement, controlling factors, and
error analysis for SS fluxes in a tidal wetland
N * N (salt marsh) TBD Field High TBD
https://pubs.er.usgs.gov/publication/70027349
25 Site history analysis? TBD TBD TBD TBD TBD TBD
TBD
26
USGS NFM for the Collection of Water-Quality
Data--Chapter A8. Bottom-Material Samples
Y TBD TBD Field High TBD
https://water.usgs.gov/owq/FieldManual/Chapter8/508Chap8final.pdf
27
USGS Guidelines and Standard Procedures
for Continuous Water-Quality Monitors
Y TBD TBD Field High TBD
https://pubs.usgs.gov/tm/2006/tm1D3/
28
Rapid assessment protocol - sediment/
substrate (to be developed?)
TBD TBD TBD Field Low TBD
TWG?
29
Contaminant testing in soils, plants, and/or animal tissues
Y N (salt marsh) Suggested Field High TBD
NYC Parks Salt Marsh Monitoring Guidelines
30
USGS National Field Manual for the Col-
lection of Water-Quality Data
Y TBD TBD Field High TBD
https://water.usgs.gov/owq/FieldManual/index.html
31
USGS SOP for collection of soil and sediment
samples for the SCoRR strategy pilot study
Y TBD TBD Field High TBD
https://pubs.er.usgs.gov/publication/ofr20151188B
32 Photo Points Y Y Suggested Field Low TBD
NYC Parks Salt Marsh Monitoring Guidelines